rs30821172 SNP Detail

Summary

• ID
  rs30821172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60957238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGTGT TCACTGAGGC
  CATGCATTAA AAGCTCTGAC TGTGGAGTTC ACATAAAGGT ACACATAGGA AAATTATCAT
  TTCTTCACAC ACAATATCAT ATCAGACTTA GATAGAAACA CTGAGCATCT CAGATCCTAA
  AGACAAGAAT GAAGGAGCAA GGGCTCTAGG TTCTAGTTTC CTGTATCACT ATTCAAATAT
  R
  AAGTTAAAAG AGTAAGAATA AGCAGTATTG AATTTCTCCT TCCTTCATGA TGTGTCAAGT
  TCAAGTTTAG CATTATTTTG GAAGTAATAA TAAACAATCA GATTTTTAAT ATGTCCAACC
  AATGTAAGGC AATTTTATAC CTGACTGCCC ATGGTATATT CATACATATG AGAAGTACCT
  TCAGATGCTG AACACAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46987314	NES10786263	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30821172					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46987314	NES10786263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60957238 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	628 bp proximal