rs30820395 SNP Detail

Summary

• ID
  rs30820395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114442058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagtctgtt tcactcattg tccaagttcc
  acctaaagtt tTTTTCCCAG TCTGACACTT GTAGTGACTC CTTCTCAAGA AAGAAAAGCT
  TTTCTATTAG TAATTAATCT ATGTGCATAG AAATTAATAA AAAGTATCAT TACTAAATAT
  W
  TAAACACACA CTACACATAC ACACACAAAC AAGCTAAAAC CCAAACATTT AACTTATTTC
  CCTACACCTT AGCATTATAC ATTATATACA TATGTAAACC CTTAAATATA TAAACCCTTA
  AAACCTTTAA GTCCTTGCCT CTTATTATAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46448022	mCV22907317	ABI	CRAMUS_MOUSE	f	SNP	T		A
ss138784505	ENSMUSSNP7221358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss324184735	CHEV_12_115716649	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30820395					SNP	T	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114442058 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	569 bp downstream
Tssr3975	transcription start site region 3975	1053 bp downstream
Tssr118082	transcription start site region 118082	1068 bp downstream