rs30820236 SNP Detail

Summary

• ID
  rs30820236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60956329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAAGGG TGTTGGATTC
  CATTACAGAT AGTTTTGAGC CACCATGTGG TTGCTGGGAA TTGAACTCAG GACCTCTGGA
  AGATAAGTCA ACTCTCTTAA CCACTGAGCC ATCTCTCCAG CCCAATCACT CAATATTTAA
  AATGATATTG TAAGATATGT TGTATAACTT CTTAATTAAA GAGATACCCA AGCCAACAAA
  W
  GTTAATTTAA CTTTCTCAGG ATGAGATAGC TGATTTGTGA TAAAATTAGG ATGTAATTCA
  AGATCTTTAT ATCCACTTTC TTACTCTCTG GCATCTTTAT AGTTTTTATT GCTTGTAGGA
  AATTGTACAT AGTTTTCATA CTTTCAGGAA AAAAATGAGA TAAGCTAGTC TGTAGAATAT
  ATTAACACAG TTTACCAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46987298	NES10786255	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30820236					SNP	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46987298	NES10786255	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60956329 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	1537 bp proximal