rs30819371 SNP Detail

Summary

• ID
  rs30819371
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60980340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACTACT AATATGTACA
  ACTGTCTGAC TCCAGAGAAA GAAATCTTAT TTGCCTAATT GAACACATAA ATCATAGAAA
  TAAATTTGTA AGCTCATACC AAAAATTAGA ATAAAATAGT GCTTAGAGAA ATATGTCTAT
  AAGCCATGAC TAAAGAAAGA CTTGAACGAT GCTTTTGCAT GATGAGGTAT GTTTTATTTA
  K
  CAAAACAGGC ACCTTGGAAA TCAGATTGTT TAGTTATCCC CATTTTACAG AAAAAGAGAT
  GTGGTAGAAT GGCAAAGAAG CATTCATTAA TCTGTGAGGA ATTCAACATC ACAGAGGCAT
  TGCCCCCTGA CATCAGTGGA TGCTTGCCTA GATTTTAGGT AGCATAACAG ACATTACAAA
  CGGAAAAACT GACAAACAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46987362	NES10786154	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30819371					SNP	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46987362	NES10786154	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60980340 () rs orientation: forward

Symbol	Name	Function Class
Rr577472	regulatory region 577472	219 bp distal