rs30818906 SNP Detail

Summary

• ID
  rs30818906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136598409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAATAGC TTCCTTCCTG
  ACAGGACAGT TACACTCTTA CCCAGTGCCT GGAGTCCAGG ATACCCTATA AAGGCCTTGA
  CCTCCATTAT CCCCAAGTGT CTGTGGACTA CTTGACAGCT TGCTGCATTT GTTGGCCTTA
  TACACTCTAC TTTGTCTGCA TAGTAAGTAC TTTCTCTTGC TCATAGCCAA ACCCCGATCC
  Y
  CATAAGTTGT AATGCTACCA GGAATCATAT CCCCTTACCC ATCTCTCTGT ATGTGTCTTT
  TACCTGCAGT AAGTGGGTTC TATGCTTAGA CCTTCGCCTC AGTCCAGAGA GTGAGGAAGG
  CTAAATGGTG TTTACTATAG CCACATAACC TTGTCTAAGG CCACACTGAC TGTGACAGGC
  CTTCCTCTGA AGCTAAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986999	NES10883815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30818906					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986999	NES10883815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136598409 () rs orientation: forward

Symbol	Name	Function Class
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585894	regulatory region 585894	953 bp proximal