rs30817460 SNP Detail

Summary

• ID
  rs30817460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98992885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCTCAGG CTTTCTAAAT TATGGGAGGT GGGGCAAGGA
  GGGTCCCACA CTTGGATGCT TCAACGTGTT GGGAACGTCC TTCAAGCCCT ATCCTTATCG
  R
  GTTATACGGT AGTGACTTCT TTCCCTATAG TGTCCATCTG TTGGGTTTAG GTTGCTTCTT
  CAGTCTGAGT CTTACGACCC TGAGATGCAA GGATAGCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45968946	mCV23116924	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss133426112	ENSMUSSNP7035218	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30817460					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98992885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr406577	regulatory region 406577			1323 bp distal
Rr635319	regulatory region 635319			1323 bp distal