rs30815645 SNP Detail

Summary

• ID
  rs30815645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136569327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTACACAT ATTCTCATGC
  ATTTATATTT ATTTTAATAT ACATGCAAAC CCTCGATGCC TAAGGTATCA TAGATAAACA
  ACTTTCTAGC AAGGATATCA AATGGAGAAA AACTATGGCC GTCTGTTAAA AAATGAAAGG
  AAGGGAAAAC TTTTCATGTC GTTTCCCACC CTGCTTCCCC CACTTGACAA CTTAAGAGGA
  W
  TCATCTTAGA TCAAAATCAT TGGTCGCAGT CATGTGTGAA ATTGGTCCAA TACAATTTTC
  ATAAAGCTTG CCAAGAATCA TGAGTGAGGG GGGAGCAATA TTAATAGGCA ATTATAAAAG
  AATATTGCTT TGGTCTTTTT TCTTAGTAGC TGATTATCAA ATCAGCATGC ATTATAACAG
  AACTAGTGTA TAAGCAGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986757	NES10884928	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30815645					SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986757	NES10884928	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136569327 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66095	predicted gene, 66095			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585888	regulatory region 585888			1171 bp distal
Rr585889	regulatory region 585889			690 bp distal
Rr585890	regulatory region 585890			226 bp distal