rs30814752 SNP Detail

Summary

• ID
  rs30814752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136536641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTAGGG TGGCACTGGA
  AGGGAGGGTT TGGCGCAATG CGTCAGGGGT GAACACACAC ATACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACGCAGGAGA GCTCAGGGCA GCCTGTTTTG
  TTCGATCAGT GTGACTCTCT GAGAAATCCT GGCATCTGAA AGGCCTATCT GGCCACGTTT
  Y
  CCCTACTAAG GAGTTCCCTT TGGGGCCTTC GTTCAAGCTG CCAGGATCGA ATTGGCTCAC
  ATCTAGGCTG AATGGTTTAA CTTTTGAGGA TTTGGGCCAT TTTCCTAAAA CTCTCTGGGA
  CTCAGTTTCT TACCGGGAGA GGGGAGATAA CAGTAACACC TGCCTTGGGG GCCCGTGAGG
  CTTAGAACAG CTGAAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46986593	NES10886025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30814752					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986593	NES10886025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136536641 () rs orientation: forward

Symbol	Name	Function Class
Gm66095	predicted gene, 66095	699 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585881	regulatory region 585881	within coordinates