rs30813860 SNP Detail

Summary

• ID
  rs30813860
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136535415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCCTTC TTTGGGTGAA
  AAGATCCAGG CAGAAAAGAA TGAGTTATTA GCTTAGCGCA AGCAAACCAG CACTTGTGGT
  AAAGGATTAG AATCACTGGC TATCAGTGGT CATCGTTAAT GGATTTTCCA TGGTGAAATT
  AATACAGGTT CTTCAGGATT TCGTTAGGCA CTTCATCATC CTAGGCATTG CTGAAGTTTG
  M
  ACTTGCCACG CTCTAAAGTT CTGTGGCAGT GTGGTTTCAA TTAGGGTGTG GAGTGGAGCG
  GGCACGTAGC AAAATACATT TTGACTTTGT CTTTCCTGTG ACATTTTCCT TCTCTCCTTT
  CCCGGAATGA CTGTCACCTT ATCATATCTT CCAGCAATGC ACACATTGGT ATTTTTATTG
  GAATCACACG GAATAGTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986581	NES10886156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30813860					SNP	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986581	NES10886156	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136535415 () rs orientation: forward

Symbol	Name	Function Class
Gm66095	predicted gene, 66095	1925 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585880	regulatory region 585880	839 bp distal
Rr585881	regulatory region 585881	1136 bp proximal