rs30813799 SNP Detail

Summary

• ID
  rs30813799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136568360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGGTGTCT TTTGACATCC TAATTGGTAT AATCATTCTT
  CATCCTGAAA CTTGGTGACA TTATAAACAC CTTGCTCAGT CTATGAGTGT GGTGTTGACT
  Y
  TGTGATACGC TTGATAGGTT CCTTCTAAAG GGGTGAGTAA ATAAACCCAT TGTGCAGGTC
  TGCACCCAGT CAGAGCTATT CCACATCAAC TTATCTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45521937	mCV23946113	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss46986741	NES10884919	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	T	C	C		C	C	T	C		C
ss135937457	ENSMUSSNP357966	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
ss320974689	CHEV_3_136525563	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30813799					SNP	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986741	NES10884919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136568360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66095	predicted gene, 66095			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585888	regulatory region 585888			204 bp distal
Rr585889	regulatory region 585889			within coordinates
Rr585890	regulatory region 585890			720 bp proximal