rs30813795 SNP Detail

Summary

• ID
  rs30813795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136568109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGGGCT TCCAGTCCTG
  GCACTCAGAA GGCTTCGAGT TTTGTGTAGA GGGGTCATGC CTTTTCTAAT GGGAAAGTTG
  CCATGTGGTT TGGTACAAAC TGGAAAACTT GCCGAAGAGC TCTATCATTC AAGCCCTCAA
  GCTGATAAAA GTCAGTATTT TGGAGGCACT GAAAGGTCTC TTTAGAAAAA TAATGAGTCA
  Y
  GAATTAAAAA CATTTCACTC GTAAATCATC GTACCAGTCC AATCCGGCTA AGGAACTTTG
  AAATATTCGT CCTCAAGATT TTAGGTTTGA CTGTTATTTA TCTTCTAGTT TTTGACAGTT
  TTGGAAAAAT AAAATAAAAA CAGTATATAA CACGGTGTCT TTTGACATCC TAATTGGTAT
  AATCATTCTT CATCCTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986737	NES10884917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30813795					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986737	NES10884917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136568109 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66095	predicted gene, 66095			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585888	regulatory region 585888			within coordinates
Rr585889	regulatory region 585889			184 bp proximal
Rr585890	regulatory region 585890			971 bp proximal