rs30813240 SNP Detail

Summary

• ID
  rs30813240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102113587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG ATGAGTTCAC GTCAAAGTGC
  Y
  ATCTACTATT TGTTTTTACC CCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46447094	mCV22785409	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135554876	ENSMUSSNP5343599	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320854842	CHEV_3_102010194	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30813240					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102113587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	1258 bp distal
Gm16160	predicted gene 16160	within coordinates
Rr582209	regulatory region 582209	1589 bp distal
Rr582210	regulatory region 582210	1088 bp distal
Tssr34830	transcription start site region 34830	1624 bp upstream
Vangl1	VANGL planar cell polarity 1	1578 bp upstream