rs30813025 SNP Detail

Summary

• ID
  rs30813025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147510779 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TTCCCCTCT CCAATATAAA TAGTGCCTCC TTCCACTACT
  TGAAGATTAT CTCAGCTACA GATGAAAACT AAAAGTACCC AAATACATAC AAGCAGCACT
  W
  ATTGGATATT TGTTTCAGAA GTGTGTGTTT GTGCGCTTGT GTGTATGTGT GTGTTTATTT
  CATGAAGTTG AGGGGAAAAT GTGCTGGGGG TGAGTTCTCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
ss46446498	mCV22800250	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147959031	ENSMUSSNP5689670	ENSEMBL	ENSEMBL_Sanger	r	SNP	T		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
rs30813025					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147510779 () rs orientation: reverse

Symbol	Name	Function Class
Rr398813	regulatory region 398813	1539 bp upstream
Rr604485	regulatory region 604485	103 bp distal
Rr604486	regulatory region 604486	189 bp distal