rs30812778 SNP Detail

Summary

• ID
  rs30812778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136567231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTTCTT TCAGTAAATA
  ATATTAAAAT GCAGACTGGT TATCTGTCTG TCTGCTGTCA CTTATGTATG GAGATTTATG
  AGGTTAGTGA AGTATTTGGT GATGGAGGAT AACTTTTGTA CCAACAGCAT ATTGTGTCCT
  TGTTCCTTCA ATTACCTCTT TCTATTTCCC TTTAATATCC CATGGCAGAT TATTTATCTT
  Y
  CTAAAACAGC TTTGGGAAGA TGCGAGGGTT GAAATGAGTG TGTCCAGGCT TCACTAAAGC
  TGTCCCTTTG CATCTGATTC TCGAGATTTC TTTTTTATTC TTTTTCTAGA TTTAGCCCAT
  TTTAATTGGA TTCAGATTTC TCATTATTGT TCAAAGGTAT AAAACAAGCC TGACCCGGTT
  AAGAATTTGT TTTCTATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986729	NES10884913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30812778					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986729	NES10884913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136567231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66095	predicted gene, 66095			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585888	regulatory region 585888			616 bp proximal
Rr585889	regulatory region 585889			1062 bp proximal
Rr585890	regulatory region 585890			1849 bp proximal