rs30812683 SNP Detail

Summary

• ID
  rs30812683
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34688380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA CCAGCATGTA CAGGCTGTCC
  M
  CACCTCTTCA CACGCTTGCT GCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45967478	mCV24689581	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss133112986	ENSMUSSNP307494	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss321782454	CHEV_6_34661445	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30812683					SNP	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34688380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			850 bp downstream
Rr628363	regulatory region 628363			1801 bp distal
Rr628364	regulatory region 628364			807 bp distal
Rr628365	regulatory region 628365			1769 bp proximal
Tssr55522	transcription start site region 55522			1999 bp downstream
Tssr55523	transcription start site region 55523			1948 bp downstream
Tssr55524	transcription start site region 55524			1903 bp downstream
Tssr55525	transcription start site region 55525			1859 bp downstream
Tssr55526	transcription start site region 55526			1810 bp downstream
Tssr60240	transcription start site region 60240			1717 bp downstream