rs30811739 SNP Detail

Summary

• ID
  rs30811739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119094867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATATTAAT ATGAAAATGC TTGATTAAAA AAAGTATAGA
  AGTAGCAGGT TCTTTGGTAC CGGGAAAATG AAATGTCTAT ATCTCTGACA GTCTTTCATA
  K
  CACCCAGTAA TTTCCCCTGC TCCCACCTAA ATATCATCAC CACCAACCCA GGCCTCTGGT
  TTTTCCCTCT TTTCCTTTCG AAAAAAAAAG AAAGAAAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45968424	mCV22292893	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30811739					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119094867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			1406 bp distal
Rr637596	regulatory region 637596			648 bp proximal