rs30811620 SNP Detail

Summary

• ID
  rs30811620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136495976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGAATGCATA GCTTGGAAGT TGCATTGTAC AGACATTGTG CTCTATAACC
  AGGTTCAAAG ATTAAGCAAA GTTGAAAACA TCATGTGCAA ACACAGTAGC TTGATTCCAT
  GTTTCTTAAA GAATGTCCTG TTTGCAAATG ACACTGCAAG GTTGTTTATG AGATTCCCAG
  Y
  CCAGGTTAGG GTGAGAGAAG AGAAATAGCC GGTTAAGTCT AGACTCAAAG GTCACCAACA
  TTCCTGCCCA TGTGAGTATA GTTTATCTGT TGTTTTTCTC CTGTCTGTGT CTGAGATAGC
  TCTTGGAAAA GGGGAAGCTG TCTCTGGGAG TAGCTTGATT TGTCAGTTGC TTTGGATTGA
  TGACTGAGCA AGCAGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46986103	NES10887509	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30811620					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986103	NES10887509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136495976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr375785	regulatory region 375785			within coordinates
Rr585873	regulatory region 585873			within coordinates
Rr585874	regulatory region 585874			1244 bp proximal
Rr585875	regulatory region 585875			1848 bp proximal