rs30810425 SNP Detail

Summary

• ID
  rs30810425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCATGGC AGCACTAACA
  GCCTTCCTTC ATTGCCTGAG TGGGAAAATA AACAGTGTTT AAATGTGACA GTCAGCAGCA
  AGTGACATTA ATTTTGTCCA TGATCAGAAA AGCTGAAGCG TATTCTGATA CAAGGACCTG
  AAGTGGAGCC AGTGCTTCAT CGCTCACCCA GTTCTTCAGG GAGAAGGCAG AGGGGTTGCA
  Y
  GCTTCAGACC ACAAAGGCCA CATAGCAAGA TCTTGTCTAA AACATAAAAA TACAAATCTC
  TTCTTGAGGG ACTTAGATTT ATCAAAGCCT GAGCAGTATT TGTTCAGGGC TTCTGCACTG
  TCGGCCCTGA AACACACGAA TGCTCTTGAC GGGCACTCTA GTGCAATGAG GTTAGCTTGA
  GAGAACTCAA TCCACCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45967071	mCV23495504	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss60887162	NES15965981	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C	C	T	C	T
ss133233776	ENSMUSSNP5092827	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30810425					SNP	C	C	T	T	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887162	NES15965981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881771 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			1125 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			1966 bp downstream
Rr631117	regulatory region 631117			1698 bp distal
Rr631118	regulatory region 631118			1614 bp distal
Rr631119	regulatory region 631119			1296 bp distal
Rr631120	regulatory region 631120			170 bp distal
Rr631121	regulatory region 631121			105 bp proximal
Rr631122	regulatory region 631122			1405 bp proximal