rs30809674 SNP Detail

Summary

• ID
  rs30809674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119977370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTTATAT AATGGTGATT TGTCGTCCCT TATTATTTTA
  TTGGGGATTA CCCTTTCCTA CTGATTCTTA GATATATACT AAAACAACTT ATGTTAAATT
  Y
  CCCATTGCAT TTCACAGGTG GCGAGCAGCC AGTTCACATG CAACCCTTTG CTTGTACCAA
  AAATGTTTCT CTATAGTTTT GTTTTGTTTG AACAGGTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45967705	mCV22584081	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss133594468	ENSMUSSNP3909268	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30809674					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119977370 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	1721 bp upstream
Rr637751	regulatory region 637751	1347 bp proximal
Rr637752	regulatory region 637752	1508 bp proximal
Tssr62747	transcription start site region 62747	1830 bp downstream
Tssr62748	transcription start site region 62748	1902 bp downstream
Wnk1	WNK lysine deficient protein kinase 1	Intron