rs30808143 SNP Detail

Summary

• ID
  rs30808143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34075662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGATAAGT ATACTTTTTT AAATTTTGTT TTGTAAATTT
  TGATTGTAAA ATCTCTGGTG GCCAACTAAG TAGTAAGAGT GAGTGTTAAA GCCTTTAGTA
  K
  CACCTATTAG TGTGTAACTG GCTTCGTTAG TGTTCCAGGT TTAAAACATG ATGTCACATA
  AATGATTCAA GCAATATTTG AGTAGATACT TCTTACTGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45468752	mCV22842366	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
ss134762072	ENSMUSSNP1306340	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss320700967	CHEV_3_33920435	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30808143					SNP	G	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34075662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	458 bp distal
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	1631 bp upstream
Rr575095	regulatory region 575095	1726 bp distal
Rr575096	regulatory region 575096	1395 bp distal
Rr575097	regulatory region 575097	289 bp distal
Tssr28785	transcription start site region 28785	1630 bp downstream
Tssr28786	transcription start site region 28786	1597 bp downstream
Tssr28787	transcription start site region 28787	1587 bp downstream
Tssr28788	transcription start site region 28788	1574 bp downstream
Tssr28789	transcription start site region 28789	1550 bp downstream
Tssr28790	transcription start site region 28790	1431 bp downstream
Tssr28791	transcription start site region 28791	1403 bp downstream
Tssr32968	transcription start site region 32968	1701 bp upstream