rs30807851 SNP Detail

Summary

• ID
  rs30807851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83576274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATCTTC AGGTCGCCCC
  GAGGTTGTGG GGACCGTCCC GCATTGTGTG CGATGCATTT CGGCGCCCAC ATGAGCCAGC
  GGCATCACGT CTGCTGTGGG AGCTGGATGT AGCTGTCTGT GCTGCACCAA AGAAGAAGGG
  TATGGTAAGG CGCTCTGTTG TAGCTTCAGT AGCCTTGGGT CTCCATGTTC CCCGCGACCT
  Y
  TGTTCCTTCC GCCTCCCAGA GTTCTTAGCG CATCCACTCT GCATCCCATA GTCTCAGGTC
  TGTCCCAACC GGGCTCTGTC TGTGGATCTC GGGCTGCCCC CCAGAGTTCT TAGCGCATCC
  ACTCCGCATC CCATAGTCTC AGGTCTGTCC CAACCGGGCT CTGTCTGTGG ATCTCCGGCC
  AGTGCGGAAG AGCGCAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45967692	mCV22812589	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss51353391	NES13744264	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	T	T	T	T
ss133348847	ENSMUSSNP5045682	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30807851					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353391	NES13744264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83576274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	11 bp distal
Gm7424	predicted gene 7424	1515 bp downstream
Rr632898	regulatory region 632898	889 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	430 bp distal
Rr632901	regulatory region 632901	448 bp proximal