rs30807635 SNP Detail

Summary

• ID
  rs30807635
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136498631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGTCCT TGTAATCAGC
  TGGGCCCAGG GATCTGGGTG CTCTTGTTAC TGAATCTTCT GGCTTGGTGT TTTTCTGGTG
  AATGTAAAAC TGATCACAGC TTCAATCGAT ATAAAGACTG ATAATGTTTC TCCATATCAT
  ACAGCTGAGC CCTGGTAGAA TCAACAAATG GAAAAGAAGC TATTATATCT TGGTCCAGTG
  S
  AGGTGAACCT ATTTAAGGCA GTTTTGTCTT GGTAATGAAA GGATTGCATC ATCCTCACCC
  CATACCTCAC CTAGTGTTTG TCTGTGTTAC TCATTTGAAG ATAAGAAAGT GACATTTTTT
  GGGAATGGTG TACTTACAAG AAGCTGGGTG TTCTCATTTC TCTATAGGAT GTTCCCAGGA
  AGTCTTATAA AAGTTTATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46986145	NES10887426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30807635					SNP	G	G	G	G	G	C	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986145	NES10887426	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136498631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66099	predicted gene, 66099			within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr375785	regulatory region 375785			1383 bp downstream
Rr585873	regulatory region 585873			1897 bp distal
Rr585874	regulatory region 585874			1091 bp distal
Rr585875	regulatory region 585875			786 bp distal
Rr585876	regulatory region 585876			within coordinates
Rr585877	regulatory region 585877			1998 bp proximal