rs30807602 SNP Detail

Summary

• ID
  rs30807602
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60706187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTATTAA CTCACGCTAT
  TTCCTGAGAA ACAGCACCCT ATCAGGATGA CTCTGAGGCA CTCCAGTATT TCAGCCAGAC
  ACCCACACAT CTCAGAGTTG TACTCCTCCA AAAAAAACAA TGAGCCCATT CACTGCCCAA
  GTGCTGTCTA GTACATAGAA AGTATCATCC CAAGCTGAAA CCTACAGATT TGTGTAAAAC
  K
  TCTTAATTCA TCTGCAAGGA AGCACAGAGG CCATTCCCTG ACTTGGAAGA TAGTACTGGA
  GCAGAGGATC AGAGGCAGGA CAATCATAAA ACTGAAGTTT GCTTACTCAA GTTTCCACGT
  AAACCAAAGC TACTATGAGT CTCAGGCAGA AGAGTCCCTT GTATAGGCGG CACATTTGCT
  GACTGGCTGT TGTTGGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45477167	mCV25047347	ABI	CRAMUS_MOUSE	f	SNP	T	G				T		T
ss46985692	NES10789323	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T		G	T	T	T	T	T	G
ss135221027	ENSMUSSNP5285533	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30807602					SNP	T	G	G	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985692	NES10789323	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60706187 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Rr577459	regulatory region 577459	657 bp distal