rs30807531 SNP Detail

Summary

• ID
  rs30807531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136470627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATTTCAT GCTGGGCCTC
  CATTCAGAAA TTCCCAGAGA GCCAGCCATG TACACTTTGT TAATTGGAAA ACCAAGTCTA
  TCATCCAATG GGACCACACC AACTCTGCTT TCCAGAAGTT ATCTTTGCAG AGTTTGTGCA
  TTCCCTGAGC CTTTCTTAAT TAAACAACTC TGCTCACAGC AGTGTGTACA GCTACTGCTA
  Y
  GTGAGGCCCC TTGGGCAGTT AACCTGGGTT GCCTTTCTCC TTGCTGGGAC TGGCTAGGCC
  CATCCTTTTC CTACAGTTGA AGTCTTTGAT AGTTGGAATT TTGCAAATTT CAGTGCATGT
  TGTGCATTCA CAGAAGCATA TCTGAAGAAC GTAATCAAAA TCAACGCTAC CACAAAGATT
  CTTTTTTCCT CCAAATATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985783	NES10888760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30807531					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985783	NES10888760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136470627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585867	regulatory region 585867			811 bp distal