rs30806720 SNP Detail

Summary

• ID
  rs30806720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136469644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTCAA TAACCTCAAA
  TATCCCCACA TAACTTGAAC ATCCTTTCCC TCCATTTCCG TTCCCATTCC TGGGAATTTC
  CTCCCATCCA TCACCATTTC TGTTGTCCTT CCCCTCTCTT ACAGGCTCCT CTTAAGCCAG
  TTTCCACTCT GGGAGCCATG GTGCCTCCCT GGGCCCCGCT GTACTCCCTG TGCCTCCGTG
  Y
  GTCTCCGTTT GCCTCTTTCC ACTTCTTTCC CAGATGCCCT GTGGACAAGG CTGGAAACAG
  CACACAAGGG AATGATTAGC TGAAATTTGG CCTTGGGAAC TGTGGAGACC AACAAGCTTG
  CAACCACTTC CTAAGGACTC AGATTTTATT AACCCATTCT AAATTCACCC CTCCCCTTCC
  TTGCCTGTTA CCAGCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985771	NES10888754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30806720					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985771	NES10888754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136469644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585866	regulatory region 585866			1933 bp distal
Rr585867	regulatory region 585867			within coordinates