rs30806688 SNP Detail

Summary

• ID
  rs30806688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30506442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATACTTAAAA GTCACCTAGA CATTATTTTC CTACCACTAT AAATAGATTA TCTTTGTGAA
  TCTACATTTT ATTGATAAAT ATAAAAGACT CATATGGAAT GGCTTTCTGT TATTGAATAT
  ATACATTAAA CTGCCAAAGC AGGGAGTCTG GTTTGGTGGT GTTGGAATTA CACACACACA
  CACACACACA CACACACACA CACACATATT CATATACACG CACGTACACA CATACCCATG
  CACACACATA CATACACACA GACATACACT CATACATATG TACACATACA CACACACCCT
  Y
  ATGCACACAC ACACACACAC ACACACACTC ACACACACAC ACCCTCATGC ACACACACCT
  TTATGAAACA GCATCGGTGC ACCCTCCTAC TAATCTTAAA TCCCTACACA CCTGAATGGA
  TCTATGTCAT GAGATAAGTG CTGTTAGAAA AAGAAAAATT TTACAACCCC ACACATTCAT
  GAAATTTGCG TAAACACTTC CAAAAATGGA AGGCTCCACT TGGGGCAGCT TTCCCTCTTC
  CCTTTCTCTC AAATCAAGAG ATATATTTTA TAATCTCTAG CTAGCTCTCT GGCAAATCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45467725	mCV25046004	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss134731484	ENSMUSSNP2400497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30806688					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30506442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574765	regulatory region 574765			1401 bp distal
Rr574766	regulatory region 574766			299 bp proximal
Rr574767	regulatory region 574767			1518 bp proximal