rs30806052 SNP Detail

Summary

• ID
  rs30806052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136468653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGAAGG ACTTCTGGCC
  CGTTCTTGTG CTGAGGGTTT GAGGAAAAAG TAGATTCTGA TGTCTGCAAA TGGATTCTTA
  AAATTTTTTT CTATTTACCA CATATCTTTT GGATGACAGT GGGCTTTGAA GATGGTTCAT
  TGAAGCCCTG ACTATAGAGT TAAAAAAAAA TTCTGAGTTG AGGAAGATGG GAAGGAGAGA
  R
  ACTTGTGAGA ATGTATAAGA GTCTGGGAGG ACCATGGGGT ATGTTGTAAG AAGGAGAAAC
  CAGCTGGGAG TGTCAGGAAG TGGAAATTAA AGAGCTTATA AGGTGTAGTA TGTAAACAAC
  TTGCAAGATA TTAACATCTA ATAGAGATTT CACCAAAGAG ACACTGGCCT TTTAGGTTGG
  CAGTGCCATT TCATGCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985763	NES10888836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30806052					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985763	NES10888836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136468653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585865	regulatory region 585865			1834 bp distal
Rr585866	regulatory region 585866			942 bp distal
Rr585867	regulatory region 585867			812 bp proximal