rs30806048 SNP Detail

Summary

• ID
  rs30806048
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136467971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTAAG AGTCTGGGTC
  CTGGGAGCTT TTGATGTCAG GTTGAATGGG AAATACAGTA AAGTGACTTT CTTCAGCACA
  GACTATTGAG TGACTAGGAA GTAAACAATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TCGTGGGGGG CCCAAATGGG GAAGAAGTAC TTACAAGTAA GTAGTAGGAA ATGATGCCCT
  S
  GTGGGTCCAG GACTGGAGAA AGTACTTAAG GTTGAGAGGG TTTCTCAGTT TATTAAGCTC
  TCTGGAGATT TAACTAATGT AGAGTCTATG GGTTGGGATG TCTATTGCTC TTTCTGTTCT
  CTCTCTCTCT CCTGCCTCAC AGTCTAAAAC TAGTCTTTAA TGGTCAAACC ACCAGAACAA
  ATCGGACAAC TTTTGCTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985759	NES10888863	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30806048					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985759	NES10888863	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136467971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585865	regulatory region 585865			1152 bp distal
Rr585866	regulatory region 585866			260 bp distal
Rr585867	regulatory region 585867			1494 bp proximal