rs30806044 SNP Detail

Summary

• ID
  rs30806044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136467593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGGTG TTTGTTTGTT
  TTCTTTAAAG AATAACATAT CTATTGCTCT GTATGGGATA GTTACGTTTG GCATCCTGGC
  AGAGTATGGA AGATGCATAA ACTGTCACTC CCAGGAGTAA CCAAATGGCT TAGTCAGCCC
  AGTTCTTCCT TACTACTGGG GAAAGCACCT CAGCGTGCTT GCCTGTGGTG AGTCAGCAGC
  Y
  TTGGAGTCAC AGTCTGATAG CTCTGCTTGC TTTTTAGGAA TCACCCCCAC CCCTCTGAGC
  CGAAACCCAT GCTGCTGTGA TCAAGTCAGG TGTCAGACGT CCAAAGAACT GGTGCCCATG
  CCTTTTTTTA GAATTATTAA ATTTCAAATA TCTATCAGCA CCTTAAGTGT GAGGTCCATT
  TGGTAAGAGT CTGGGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985755	NES10888861	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30806044					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985755	NES10888861	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136467593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930599N24Rik	RIKEN cDNA 4930599N24 gene			1872 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585865	regulatory region 585865			774 bp distal
Rr585866	regulatory region 585866			within coordinates
Rr585867	regulatory region 585867			1872 bp proximal