rs30806024 SNP Detail

Summary

• ID
  rs30806024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGC AGCCACAGGT TTACAGTTCC
  Y
  GGCAGCAGCG CCCCTCCCGA AGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45966715	mCV24757274	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132976317	ENSMUSSNP5864752	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321738442	CHEV_6_8898257	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30806024					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	within coordinates
Cpgi17156	CpG island 17156	1403 bp proximal
Nxph1	neurexophilin 1	mRNA-UTR
Rr626455	regulatory region 626455	within coordinates
Rr626456	regulatory region 626456	372 bp proximal
Rr626457	regulatory region 626457	929 bp proximal
Tssr54925	transcription start site region 54925	170 bp upstream
Tssr54926	transcription start site region 54926	313 bp upstream
Tssr54927	transcription start site region 54927	351 bp upstream
Tssr54928	transcription start site region 54928	658 bp upstream
Tssr54929	transcription start site region 54929	694 bp upstream
Tssr54930	transcription start site region 54930	795 bp upstream
Tssr54931	transcription start site region 54931	1413 bp upstream
Tssr54932	transcription start site region 54932	1555 bp upstream