rs30805911 SNP Detail

Summary

• ID
  rs30805911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136498256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTCTTA GCTCTGATAC
  CACTTAAGGG TTAAAAACTA AGTAAAGCAT GATCTCTAAG ACGTTGCTAA GGCAAAATAT
  TCTCTTGTTA CCATTTTATG AAATTTTCCT GAAAGAAGTC CTGCAGCAGA TCTATCCCCC
  CCCCCCCTTC CAGTGAAGTT GTTACCATGA CTACGAGTCT TGGTTGTTTC CTTTAGCCTA
  R
  TGGGAATCCC TTCAGAAGTG CATGGAGTTC CTCAGATATG AGAAGCAATA GTTCTAGGTA
  TTAGGATCAG GCCCACGAAG CAAGAGCTCA TGGATGGCTG CTAACTCACA ATAGGGGTTT
  GTTTAAAACC CATTTAATTC AAAACCCAAA GCCTGGTAGG TCTTTATTTT TGAGTCATGG
  TCCTTGTAAT CAGCTGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46986131	NES10887418	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30805911					SNP	G	G	G	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986131	NES10887418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136498256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66099	predicted gene, 66099			118 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr375785	regulatory region 375785			1008 bp downstream
Rr585873	regulatory region 585873			1522 bp distal
Rr585874	regulatory region 585874			716 bp distal
Rr585875	regulatory region 585875			411 bp distal
Rr585876	regulatory region 585876			341 bp proximal