rs30805909 SNP Detail

Summary

• ID
  rs30805909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136498117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGAGTA GCAAGTGCTC
  TCAACTGCTG AGTCAGCCCT CTCTCCAATG GTCATGCACG GGGGTTTGCC ATCAGTGTGG
  TGGAGAAAAG CTAAGCCTGC AGTGTTTCAG CCTCTTTTCC TTTGAGAACT TGGAGTGCTT
  GGGGTCTTAG CTCTGATACC ACTTAAGGGT TAAAAACTAA GTAAAGCATG ATCTCTAAGA
  Y
  GTTGCTAAGG CAAAATATTC TCTTGTTACC ATTTTATGAA ATTTTCCTGA AAGAAGTCCT
  GCAGCAGATC TATCCCCCCC CCCCCTTCCA GTGAAGTTGT TACCATGACT ACGAGTCTTG
  GTTGTTTCCT TTAGCCTAGT GGGAATCCCT TCAGAAGTGC ATGGAGTTCC TCAGATATGA
  GAAGCAATAG TTCTAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46986129	NES10887417	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805909					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46986129	NES10887417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136498117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66099	predicted gene, 66099			257 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr375785	regulatory region 375785			869 bp downstream
Rr585873	regulatory region 585873			1383 bp distal
Rr585874	regulatory region 585874			577 bp distal
Rr585875	regulatory region 585875			272 bp distal
Rr585876	regulatory region 585876			480 bp proximal