rs30805471 SNP Detail

Summary

• ID
  rs30805471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60694311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTAACA GTATCTTAGG
  TCTCTTTACT GCTGCCGCCC CTACCCCTAA CCTTCCAGTC CACAGTCCTC ACAACCACGA
  TTCTATTCTC TATTTCTGTG AGGTCAAAAT TTTTAAATTT CACATATGAC TGATATAGTA
  TGAAATGCTT TTTTCTGTTC CCATATTATT CCTCTTAGTG TGGCATCTTC CAGGTTACTG
  R
  GAATATTTTA TGCACAGGAA CAAAACACAA AGAGTGGCTG TAGAAGAACA GTATGTTTAG
  AGTCTTCTGT GGCCATATCT GGTTTGTTTC CTACTGCTGT AGCACAAGGA CAAACACAAG
  TTGGGGGAGA AAAAGGATAT AAACTTCATC TTAATAGCTT ACAGTCTATC ATAAAGCAGA
  CTCGGCAGAA ACTCAAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985562	NES10789535	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805471					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985562	NES10789535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60694311 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Gm38326	predicted gene, 38326	1471 bp upstream
Rr577457	regulatory region 577457	826 bp distal
Rr577458	regulatory region 577458	1280 bp proximal