rs30805467 SNP Detail

Summary

• ID
  rs30805467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60693523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGACT TTAGAACATG
  AGGTATTGAG AATTACCTGA AGATAGAAGC TGCTCCTACT GAAGGAGAGA GAGAGAGAGA
  GCTCGAAGGA GGGAGGCACA GAGAACACAA GTGTGCACAG ATGTTTCAAA ATTGTGATCT
  GAAAGCTATT CTGGCTTAGA GATGTCTTTA TCCTCAAGTC CAAGTAGATC AAAGAGAGTG
  Y
  TTAAAATGGA GGAAGAATTT ATTGTTCACT AGGGTCAAGC CAAGCCTTAA GGAAGAAAGG
  CCTTAAGGAA GAAAGGTTTT CTACTTAATC TTTGAGTTTT TGTTTTCACA CAGCTGGGGT
  AATTAGGTAT GGCCTAGGAA AATTTATTTC TTGGAATGGA AGATGGCAGT ACAGAACTCA
  GAATGCAGTC TCCACTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985558	NES10789581	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805467					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985558	NES10789581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60693523 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Rr577457	regulatory region 577457	38 bp distal