rs30805408 SNP Detail

Summary

• ID
  rs30805408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60704082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTTATC TCTCTTAAAC
  AGCAACCAAC ACACAAAAGT TAGTGTTTTC TTCTATGAAT AAACCAAAAG TACACTTTAT
  TTCCTAACAA AAAGCTATAT AAAAACATTT AAAACTGTTT ATAATTTATG CTTACCCTTA
  CATGAAAATA AATACAAAAA TCATTAATAT TTTTTTCAGT TACATTTATT GAGACTTTCT
  R
  CTCCAGTTAC TCAAAGAAAT TGTGTTTAAC TAGTCCCTCA TAGAGTTTAC AGTGTATTGG
  CAGAAAAAAA TATAAAAAGC TGTTAGAATA AAATACAACG ATTGGTAGAG GAGTAAGAAT
  CTGTGTCTCA CAGGATCCAT AAGAGTAAAG CGCTCTACAC TGAAGACACA TGGAAACATC
  TTTGAGACTG AGAGGAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985658	NES10789295	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	A	G	G	G	G	G	G	A	A
ss135220970	ENSMUSSNP3505264	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805408					SNP	G	A	A	G	G	G	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985658	NES10789295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60704082 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Gm38326	predicted gene, 38326	1933 bp downstream
Rr577459	regulatory region 577459	1165 bp proximal