rs30805404 SNP Detail

Summary

• ID
  rs30805404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60703644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCCTT GTCCCCACAG
  GGGTGCCTGG TTGAGAAGAG AGCATCCCCT GGAGCTTGTA GCTAGCTCTG CCTCTTCTCG
  CATCCTCTCT AGGTGCTACT GCATTGTGCA CTACTGTAGC TCTCAACCAT GACCTTGCTT
  CAGATGCCCC TGTTTCTGAC TGTAAAGCTT TTATCTCCTG TCTCTTGTCC AGTAGGAAAA
  K
  CACAGAGCAA AATGAATAGC TTGAAAAAGG GTTGGGGTGG GGGACATACA ATTTTTAAAT
  TAAATTATAA TATACTCATT CAGATTTAGT GTATTTTTCC CCTCAACAAC GAGTTTACAG
  AAAATAGACA ACTGCTATAT TAAAAGCCTG ATAGCCATAT GACCGTATTG CTGGTTGTGC
  TGGCAAACAC CAGCAGGATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985654	NES10789293	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	T	T	T	T	G	T	T	G	G
ss135220952	ENSMUSSNP2978012	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805404					SNP	T	T	G	G	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985654	NES10789293	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60703644 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Gm38326	predicted gene, 38326	1495 bp downstream
Rr577459	regulatory region 577459	1603 bp proximal