rs30804699 SNP Detail

Summary

• ID
  rs30804699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136410149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGTATC TGTGTGTAAG
  TTAACCTTTC AGAAGGCTAA CTTTCCTAGA ATAATGAAGC TTTTTATAAT TGCAGGTTAA
  CTTTGGCTAA CTTTATAAAT CACAATAATT TTGAATTAGT ACATAGGAAG GGATTTATGA
  ACATTGTGTA ACGTAGCATT GGGAGGAAAC TAGAGCCCAG CATGCTATAG GCACTGCCGG
  Y
  GCATTACGCA AATATGCTCC TGTTGCTCAA CAATTTGTTG TTGTTGTTGT TGTTGTTGTT
  ATTGTTTTTC CTGGTCTTAA AAATCGGGGA CTCTTTTGTC ACAGTTATCT TGGAAGAAAA
  TCATTTTTAA AAATTCCCTA GGCTGGAGAC ATTGCAATGA AAAAAGTATA GATGATCTTG
  ATAAATTACT TCTAATGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985549	NES10890629	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30804699					SNP	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985549	NES10890629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136410149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			1649 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			within coordinates
Rr585850	regulatory region 585850			1214 bp distal
Rr585851	regulatory region 585851			187 bp proximal
Rr585852	regulatory region 585852			543 bp proximal
Tssr31882	transcription start site region 31882			1621 bp downstream