rs30804695 SNP Detail

Summary

• ID
  rs30804695
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136409942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTGGAAGG TGAGTGAGAG TAAATCAGCT GATATTGGGT
  GAACTCCTTC TAGAAGACTC AGGCTTCCTT TTTCTGGTTA ATTTCCCCAA GGTGAAAATT
  K
  TAATCTCAAG AGTATCTGTG TGTAAGTTAA CCTTTCAGAA GGCTAACTTT CCTAGAATAA
  TGAAGCTTTT TATAATTGCA GGTTAACTTT GGCTAACTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45525568	mCV23946467	ABI	CRAMUS_MOUSE	f	SNP		G	G			G	T
ss46985545	NES10890627	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		T	G		G	T		G
ss320974618	CHEV_3_136367145	CHEVERUD	SCREENING_POP	f	SNP									T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30804695					SNP	G	G	G	G	G	G	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985545	NES10890627	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136409942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			1442 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			within coordinates
Rr585850	regulatory region 585850			1007 bp distal
Rr585851	regulatory region 585851			394 bp proximal
Rr585852	regulatory region 585852			750 bp proximal
Tssr31882	transcription start site region 31882			1414 bp downstream