rs30804644 SNP Detail

Summary

• ID
  rs30804644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32467356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT GCAAGCATGA GGATAGATGG
  Y
  GTCCCGGGAC CCATATAAAA GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45467997	mCV24284894	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss134749463	ENSMUSSNP1720001	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320698127	CHEV_3_32312129	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30804644					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32467356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr574959	regulatory region 574959			375 bp distal
Tssr28752	transcription start site region 28752			1638 bp upstream