rs30804540 SNP Detail

Summary

• ID
  rs30804540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17720314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGGGTC AGAGTCTGAT
  GGTTGTGGAG AAAACTAACA CTCCAAAGTT ATCCTTTAGC TCTACACATG TGCTGTGGCA
  CGTGTGTGTC CTCTACCTCA GCTTCCACCA ACAGCAAATA AAAACAAAAT AAAATTTAAA
  CTCAGTGTAG TAAGTCATTA GGCATGCCTC GTTCCTTCTC AGTCCGGGGT CTGTAACTCA
  Y
  GTGCCCTGGG CTGGACTCTT GACTGGGCTC TGGTTTCAGT CTACAGATGC AGCTGAGATT
  GGCTCCAGGT CCGCTCCTTG TCTCTCCAGG TCTGTTCTTT GTCTCTCCTC TCAGATAATC
  AGGGCAAGTT CTTCTCATGG GAAGTGTCAG AAGGAAAAAT AAAAATAAAA GTAGGAAGTT
  GGCCATCCCC CTCCCCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45964774	mCV23969005	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133021369	ENSMUSSNP5431702	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30804540					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17720314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43533	predicted gene 43533			within coordinates
Rr626841	regulatory region 626841			within coordinates
Rr626842	regulatory region 626842			1046 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant