rs30803296 SNP Detail

Summary

• ID
  rs30803296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108825653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCACACGCC TTTAATCCCA GCACTCGGGA GGCAGAGGCA GGCAGATTTC TGAGTTTGAG
  GCCAGCCTGG TCTACAAAGT GAGTCCCAGG ACAGCCAGGG CTACACAGAG AAACCTTGTC
  TTGAAAAACC AAAAAAAAAA AAAAAAGAAG TCGGTTCTTG TATAGACACC TACAGGCAGT
  CTGACTGCCA AAGACTTAAG GGAGGAGTTG GGAAAAAGTT AGTGTTGATT TTGCTTCAGT
  GACACACAGG GAGGTAGACC ACCAGAGGGA CAGAGTGACC TTCCCTTTCA CCTTTGCCTG
  Y
  GCTCTCTGGA TCCACAGCCG GGAAGCCTGC AATGAAGGAG AAGGAGACCC ACCGCTCTAC
  GTCAACGTGA ACATGTTCAG TGGGCAGCTC ATGAACACCT GGATTGACTC ACTGCAGGCT
  TTCTTCCCTG GACTGCAGGT ATCTGGCAGG CTTGTGTTGA GAAGGGCTGG GGAGACAGCT
  CAGTGGGTAA GAGTGTTGCT GTGTGAACCT GCAGGCCTGA GTTTGAATCT TCAGCACGCA
  CCTAAAAGGA CAGTGGTGGC AGCATGGCCC CGTCATTCCA GGGCTGGGGG AGAGGGGTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45966387	mCV24064248	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss133510387	ENSMUSSNP7086954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30803296					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108825653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636224	regulatory region 636224			1082 bp distal