rs30803291 SNP Detail

Summary

• ID
  rs30803291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136408972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGCAG TAGACTTCTA
  TGTAGAAAAA CAGGAAGTTA ATCATGGGAC ACTTTTCTTC TTACTGCTGT AAACACAACA
  GTGAGGACTG CCACAGTTAA CACTACATCC TATGTCTCCC TTCATCTGAA GTAGGTGTTA
  GGTAACATGC CAAGTGAGTT TTCCTAACTG TTCGTAGTCA AAGAATCTTT GTATACTGAC
  Y
  CTTTTGTATG GAATGTTGTA GCATTAGGCG TAAATGAGTA CCATGATCTT TTTTATTTAT
  TTAAAAATAG GCTTTACATA TATTATTTCT ATGTCAATAT GTCTTTGTCT TTGTCTCTCC
  CTCTCTCCCT CTCTCTCTCC CTCTCTCTCT CCCTCCCTCC CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985531	NES10890708	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30803291					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985531	NES10890708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136408972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			472 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			829 bp upstream
Rr585850	regulatory region 585850			37 bp distal
Rr585851	regulatory region 585851			1364 bp proximal
Rr585852	regulatory region 585852			1720 bp proximal
Tssr31882	transcription start site region 31882			444 bp downstream