rs30803285 SNP Detail

Summary

• ID
  rs30803285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136408710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCTTTTC TGCAATGACT ATTAAAATTT GTGTGAATCA
  AATTAATATT AAAATAGGGC ATATTAATTA TTACTGACTA CTGAGAAATC ATGTTTAGAG
  Y
  TTAAGCTTTG TTTTTATTTT TGATGCATTG TGTTAATGAT TAAGGATTAA AAAAATCTTG
  GCAGTGGGCA GTAGACTTCT ATGTAGAAAA ACAGGAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45542043	mCV23946475	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss46985525	NES10890704	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C		C	T	C		C	C	T	C		C
ss135937211	ENSMUSSNP3441401	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320974615	CHEV_3_136365913	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30803285					SNP	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985525	NES10890704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136408710 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			210 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			1091 bp upstream
Rr398058	regulatory region 398058			1924 bp downstream
Rr585850	regulatory region 585850			32 bp proximal
Rr585851	regulatory region 585851			1626 bp proximal
Rr585852	regulatory region 585852			1982 bp proximal
Tssr31882	transcription start site region 31882			182 bp downstream