rs30803232 SNP Detail

Summary

• ID
  rs30803232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAAAT TCTCATTGAC
  ACATCCAGTT TGCGTAAAGT AAAAACACAA TCATAGACAT TTTAACTGAG ACGGTTCCAT
  AGTTGTTAGA CCCTTTCTTG CCATAGCAAC TTAGTTTTTC TTCTTGCTTT TTATTTTCAT
  TTTAGTAATG GAAATGTTCA TCTTTTAGGC ACTTTGGCCA GTATGAAGAT TTTTTTTTTT
  Y
  TGATGAATGC CTTCAGGATT TTCTTGACGT GACATTTTTA AGTAAATAAA ATTAAATTCT
  GTCTGTGGAA TTAATGTTCT CTCTCTCTCT CTCTCTGGAC ATTAAATGCC TCTAAAATTA
  GGATTAGTCT TGTTTGGTTT TCTTTTTTCC CCCCGCTATT TTCTATTTTC CATTTTCTCC
  CTCCCCAACT CCATTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45965938	mCV22806608	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		C		C
ss47815378	NES11711313	PERLEGEN	MM_PANEL2	f	SNP	T		C	C		T		C	C	T		T	C	T
ss133022208	ENSMUSSNP4994731	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30803232					SNP	T	T	C	C	C	T	C	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815378	NES11711313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1279 bp upstream
Rr626856	regulatory region 626856			507 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			543 bp downstream