rs30802754 SNP Detail

Summary

• ID
  rs30802754
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG TTGAGCTCTG CCCTAGATTC
  W
  TAAAATATAC ATAAAGCATA AGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45965325	mCV24874556	ABI	CRAMUS_MOUSE	f	SNP	T	T	A				A		T
ss48076043	NES11870381	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A		A	T	T	A		A	A	T	A		A
ss133589814	ENSMUSSNP2447151	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						T
ss321928126	CHEV_6_119428618	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30802754					SNP	T	T	A	A	A	A	A	A	T	T	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076043	NES11870381	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	268 bp proximal
Fbxl14	F-box and leucine-rich repeat protein 14	1068 bp upstream
Rr637690	regulatory region 637690	362 bp distal
Rr637691	regulatory region 637691	578 bp proximal
Rr637692	regulatory region 637692	1793 bp proximal
Tssr58502	transcription start site region 58502	880 bp upstream
Tssr58503	transcription start site region 58503	904 bp upstream
Tssr58504	transcription start site region 58504	931 bp upstream
Tssr58505	transcription start site region 58505	1145 bp upstream
Tssr62722	transcription start site region 62722	1859 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron