rs30802499 SNP Detail

Summary

• ID
  rs30802499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83977433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG ACCAAAGCAG CAAACACACT
  R
  GGGAAGTGGT TCCTCCTTTC AGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466184	mCV24158865	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss320822207	CHEV_3_83874048	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30802499					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83977433 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Gm65750	predicted gene, 65750	1843 bp upstream
Rr397735	regulatory region 397735	648 bp downstream
Rr578974	regulatory region 578974	686 bp distal
Rr578975	regulatory region 578975	326 bp distal
Rr578976	regulatory region 578976	1353 bp proximal
Rr578977	regulatory region 578977	1662 bp proximal
Tssr29729	transcription start site region 29729	1872 bp upstream