rs30802082 SNP Detail

Summary

• ID
  rs30802082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116760264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC TTAATTAACT CTAAAGGGAT
  R
  TGTTTGGGCT CGTGGGATAA TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466282	mCV23495032	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135676579	ENSMUSSNP39317	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320897072	CHEV_3_116669533	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30802082					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116760264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1652 bp upstream
Cpgi13743	CpG island 13743			1978 bp proximal
Gm52613	predicted gene, 52613			579 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583813	regulatory region 583813			1901 bp distal
Rr583814	regulatory region 583814			within coordinates
Rr583815	regulatory region 583815			137 bp proximal
Rr583816	regulatory region 583816			171 bp proximal
Rr583817	regulatory region 583817			1562 bp proximal
Tssr35360	transcription start site region 35360			1923 bp downstream
Tssr35361	transcription start site region 35361			1948 bp downstream