rs30801524 SNP Detail

Summary

• ID
  rs30801524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136408596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAAAAAA AAGTCTGCTT
  TCACTACACC AAATTTTTCA TTAGTTATTC CAAGCAGGTT TGTTTGTTTG TTTTTGTTTT
  TGTTTTTGTT TTTGTTTTTT GGGGGGTTTT TTTGGTTTTT TTTTTTTTTT GGCAGCACGT
  AAGTTTATTC TCAAATCAAA CAAATTATTA TTTTTAAGTG GAATTTATAT GGCCTATTTC
  R
  TTCTTCAGAG AAAAGTCCTT TTCTGCAATG ACTATTAAAA TTTGTGTGAA TCAAATTAAT
  ATTAAAATAG GGCATATTAA TTATTACTGA CTACTGAGAA ATCATGTTTA GAGCTTAAGC
  TTTGTTTTTA TTTTTGATGC ATTGTGTTAA TGATTAAGGA TTAAAAAAAT CTTGGCAGTG
  GGCAGTAGAC TTCTATGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46985523	NES10890703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30801524					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985523	NES10890703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136408596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42822	predicted gene 42822			96 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			1205 bp upstream
Rr398058	regulatory region 398058			1810 bp downstream
Rr585849	regulatory region 585849			1919 bp distal
Rr585850	regulatory region 585850			146 bp proximal
Rr585851	regulatory region 585851			1740 bp proximal
Tssr31882	transcription start site region 31882			68 bp downstream