rs30800761 SNP Detail

Summary

• ID
  rs30800761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34724711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CGAGGGTGAC TCTGCCCTGC
  Y
  GGCGGACGGG CTTTGTCCCC GGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44965396	mCV23105213	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss146343033	ENSMUSSNP6547830	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss325795196	CHEV_19_34821801	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30800761					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34724711 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	1787 bp downstream
Rr546785	regulatory region 546785	33 bp distal
Rr546786	regulatory region 546786	within coordinates
Rr546787	regulatory region 546787	761 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	mRNA-UTR
Tssr156164	transcription start site region 156164	998 bp downstream
Tssr159005	transcription start site region 159005	196 bp upstream
Tssr159006	transcription start site region 159006	125 bp upstream
Tssr159007	transcription start site region 159007	92 bp upstream
Tssr159008	transcription start site region 159008	60 bp upstream
Tssr159009	transcription start site region 159009	within coordinates
Tssr159010	transcription start site region 159010	10 bp downstream
Tssr159011	transcription start site region 159011	123 bp downstream
Tssr159012	transcription start site region 159012	142 bp downstream
Tssr159013	transcription start site region 159013	172 bp downstream