rs30800641 SNP Detail

Summary

• ID
  rs30800641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60414129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT CTCTTAGGAC TCTAGTATTG
  R
  CATCTGTTCA CAGTTAAAAA AAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466861	mCV22694987	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss135219314	ENSMUSSNP2136903	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320786518	CHEV_3_60310630	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30800641					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60414129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577412	regulatory region 577412			1392 bp distal
Rr577413	regulatory region 577413			1364 bp proximal
Tssr29286	transcription start site region 29286			1670 bp downstream
Tssr29287	transcription start site region 29287			1756 bp upstream